traitScreen: Filter prescreened myDNA object filter for trait of interest

In IngaPa/myDNA: myDNA: R package to analyze personal genotypes

Description

Filter prescreened myDNA object filter for trait of interest

Usage

traitScreen(myScreenDNA, trait = "all", risk = "high.protective")

Arguments

myScreenDNA	GRanges object, output of importDNA function
trait	(character) which trait are you interested in
risk	(character; default "high") "high" -> OR>=1.5, "elavated" -> OR >1&<1.5 "protective" -> OR >0.75&<1 "high.protective" -> OR <0.75,

Details

This function allows you to filter your imported myDNA object + overlapped with database of interest (GWASCatalog) by selecting trait in which you are interested in, and selecting category of SNPs. For example, high risk SNPs are those which have reported OR or beta >1.5.

Author(s)

Inga Patarcic

Examples

## Not run: 
myAchille <- traitScreen(myScreenDNA, risk="high")
myDepression <- traitScreen(myScreenDNA, risk="all",
trait="unipolar depression")
myDepression.high <- traitScreen(myScreenDNA, risk="high",
trait="unipolar depression")

## End(Not run)

IngaPa/myDNA documentation built on Oct. 30, 2019, 7:22 p.m.