neanderthalMe: Function to screen for certain Neanderthal variants

In IngaPa/myDNA: myDNA: R package to analyze personal genotypes

Description

Function to screen for certain Neanderthal variants

Usage

neanderthalMe(myDNA)

Arguments

myDNA

(character) path to the genotype file

Details

SOURCE 1: 23andMe report If you have certain Neanderthal variants, it means that some of your physical traits may trace back to your Neanderthal ancestors.

Tested variants/gene/trait: rs7544462/Gene: MEAF6/Trait: Height rs1877547/Gene: LPP/Trait: Height rs4849721/Gene: Near the EN1 gene/Trait: Less back hair rs12458349/Gene: Near the PHLPP1 gene/Trait: Straight hair rs11213819/Gene: Near the C11orf53 gene/Trait: Less likely to sneeze after eating dark chocolate

NOTE! MyHeritage genotypes do not report some if the SNPs, however missing genotypes can be imputed and accessed by DNALand imputation tool

!!!! myAllele column reports whether risk allele was identified in my genome

Author(s)

Inga Patarcic

Examples

## Not run: 
# example myHeritage
 library(myDNA)
 library(dplyr)
 library(stringr)
  Genome="/data/akalin/Projects/AAkalin_myDNA/Data/MyHeritage/MyHeritage_raw_dna_dataInga/MyHeritage_raw_dna_data.csv"
   myDNA <- importDNA(myGenotypes = Genome,type = "myHeritage" )
 neanderthalMe(myDNA)

## End(Not run)

IngaPa/myDNA documentation built on Oct. 30, 2019, 7:22 p.m.