celiacDisease23AndMe: Function to screen for celiac disease based on 23andMe tested...

In IngaPa/myDNA: myDNA: R package to analyze personal genotypes

Description

Function to screen for celiac disease based on 23andMe tested SNPs

Usage

celiacDisease23AndMe(myDNA)

Arguments

myDNA

(character) path to the genotype file

Details

SCREEN 1: rs2187668 (T) and rs7454108 (G) SOURCE: https://blog.23andme.com/health-traits/new-23andme-report-celiac-disease/

NOTE! MyHeritage genotypes do not report this SNP, however missing genotypes can be imputed and accessed by DNALand imputation tool

!!!! myAllele column reports whether risk allele was identified in my genome

Author(s)

Inga Patarcic

Examples

## Not run: 
# example myHeritage
 library(myDNA)
 library(dplyr)
 library(stringr)
  Genome="/data/akalin/Projects/AAkalin_myDNA/Data/MyHeritage/MyHeritage_raw_dna_dataInga/MyHeritage_raw_dna_data.csv"
   myDNA <- importDNA(myGenotypes = Genome,type = "myHeritage" )
  celiacDisease23AndMe(myDNA)

## End(Not run)

IngaPa/myDNA documentation built on Oct. 30, 2019, 7:22 p.m.