celiacDiseaseExtended: Function to screen for celiac disease based on 6 CD...

In IngaPa/myDNA: myDNA: R package to analyze personal genotypes

Description

Function to screen for celiac disease based on 6 CD associated SNPs

Usage

celiacDiseaseExtended(myDNA)

Arguments

myDNA

(character) path to the genotype file

Details

SOURCE: https://www.mygenefood.com/genetics-celiac-disease-need-know/ https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2386975/ DQ2.5 rs2187668 T (0.09) DQ8 rs7454108 G (0.18) DQ2.2 rs2395182 T (0.71) rs7775228 G (0.10) rs4713586 G (0.025) DQ7 rs4639334 A (0.09) NOTE! MyHeritage genotypes do not report this SNP, however missing genotypes can be imputed and accessed by DNALand imputation tool

!!!! myAllele column reports whether risk allele was identified in my genome

Author(s)

Inga Patarcic

Examples

## Not run: 
# example myHeritage
 library(myDNA)
 library(dplyr)
 library(stringr)
  Genome="/data/akalin/Projects/AAkalin_myDNA/Data/MyHeritage/MyHeritage_raw_dna_dataInga/MyHeritage_raw_dna_data.csv"
   myDNA <- importDNA(myGenotypes = Genome,type = "myHeritage" )
  celiacDiseaseExtended(myDNA)

## End(Not run)

IngaPa/myDNA documentation built on Oct. 30, 2019, 7:22 p.m.