myDNAScreenDB: Overlaps myDNA genotypes with SNP-trait database of interest
In IngaPa/myDNA: myDNA: R package to analyze personal genotypes
Description
Usage
Arguments
Details
Author(s)
Examples
View source: R/genomeScreens.R
Description
Overlaps myDNA genotypes with SNP-trait database of interest
Usage
1
myDNAScreenDB(myDNA, database = "ebicat37")
Arguments
myDNA
(data.frame) analyzed genotypes, an output of importDNA function
database
(character) info database which stores info about genotyping
OPTIONS: "ebicat37","ebicat38", "CurrentGwascat", "taSNP"
NOTE! if currentGWAS option used then input myDNA needs to be liftovered
to hg38
Details
This function identifies overlap between my genotypes (myDNA object)
and database which stores info about SNP-trait associations. Currently,
GWASCatalog (hg19,hg38 as ebicat37,ebicat38, and makeCurrentGWASC). However,
in the future it will use info from SNPedia as well.#'
Author(s)
Inga Patarcic
Examples
1
2
3
4
5
## Not run:
myScreenDNA <- myDNAScreenDB(myDNA = myDNA,
database="ebicat37" )
## End(Not run)
IngaPa/myDNA documentation built on Oct. 30, 2019, 7:22 p.m.
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Author(s) Examples
View source: R/genomeScreens.R
Description
Overlaps myDNA genotypes with SNP-trait database of interest
Usage
1 | myDNAScreenDB(myDNA, database = "ebicat37")
|
Arguments
myDNA |
(data.frame) analyzed genotypes, an output of importDNA function |
database |
(character) info database which stores info about genotyping OPTIONS: "ebicat37","ebicat38", "CurrentGwascat", "taSNP" NOTE! if currentGWAS option used then input myDNA needs to be liftovered to hg38 |
Details
This function identifies overlap between my genotypes (myDNA object) and database which stores info about SNP-trait associations. Currently, GWASCatalog (hg19,hg38 as ebicat37,ebicat38, and makeCurrentGWASC). However, in the future it will use info from SNPedia as well.#'
Author(s)
Inga Patarcic
Examples
1 2 3 4 5 | ## Not run:
myScreenDNA <- myDNAScreenDB(myDNA = myDNA,
database="ebicat37" )
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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