Files in JPSieg/MeltR
Automated fitting of RNA/DNA absorbance melting curves and fluorescence binding isotherms in R
.gitignore
DESCRIPTION
LICENSE.md
Manual.log
Manual.md
Manual.pdf
Manual_cover.md
MeltR.Rproj
NAMESPACE
R/AB_qPCR_export.to.MeltR.csv.R
R/BLTrimmer.R
R/Calc_exctinction_coef.R
R/Helix.energy.R
R/data.R
R/enumerate.states.R
R/meltR.A.derivative.R
R/meltR.A.model.R
R/meltR.F.model.R
R/meltR.a.R
R/meltR.a.nlme.R
R/meltR.f.R
R/o3a.to.MeltR.csv.R
R/read.o3a.R
R/state.drawer.R
README.md
Video_tutorials/01_Basic_workflow_fluorescence/.Rhistory
Video_tutorials/01_Basic_workflow_fluorescence/Cover.png
Video_tutorials/01_Basic_workflow_fluorescence/Example_script.R
Video_tutorials/01_Basic_workflow_fluorescence/Fit_VH_summary.csv
Video_tutorials/01_Basic_workflow_fluorescence/Fit_method_1_VH_plot.pdf
Video_tutorials/01_Basic_workflow_fluorescence/Fit_method_2_Gfit_plot.pdf
Video_tutorials/01_Basic_workflow_fluorescence/js5060_Helix_J_formatted.csv
Video_tutorials/02_Basic_workflow_absorbance/.Rhistory
Video_tutorials/02_Basic_workflow_absorbance/BLTrimmer_baseline_ensemble_analysis.pdf
Video_tutorials/02_Basic_workflow_absorbance/BLTrimmer_baseline_ensemble_analysis_results.csv
Video_tutorials/02_Basic_workflow_absorbance/Example_script.R
Video_tutorials/02_Basic_workflow_absorbance/Fit_method_1_individual_fits.csv
Video_tutorials/02_Basic_workflow_absorbance/Fit_method_1_normalized_fit_plot.pdf
Video_tutorials/02_Basic_workflow_absorbance/Fit_method_1_raw_fit_plot.pdf
Video_tutorials/02_Basic_workflow_absorbance/Fit_method_2_plot.pdf
Video_tutorials/02_Basic_workflow_absorbance/Fit_method_3_Gfit_normalized_plot.pdf
Video_tutorials/02_Basic_workflow_absorbance/Fit_method_3_Gfit_normalized_plot.svg
Video_tutorials/02_Basic_workflow_absorbance/Fit_method_3_Gfit_raw_plot.pdf
Video_tutorials/02_Basic_workflow_absorbance/Fit_summary.csv
Video_tutorials/02_Basic_workflow_absorbance/Heteroduplex_js3041_HelixA_No_label.csv
Video_tutorials/02_Basic_workflow_absorbance/Thumbnail.png
chapter_break.tex
data-raw/df-FAM-C-BHQ1-data.R
data-raw/df-abs-ROX-data.R
data-raw/df-abs-data.R
data-raw/df-ext-data.R
data-raw/df-fluor-data.R
data-raw/df-non2S-data.R
data-raw/df-test-data.R
data-raw/df-test-param-data.R
data-raw/df-test-results.R
data/BLtrimmer_parameters_for_test.csv
data/BLtrimmer_test_results.csv
data/Ext_coef_data.csv
data/Heteroduplex_js3041_HelixA_No_label.csv
data/Modeled_data.csv
data/Parameters_for_test.csv
data/Test_results.csv
data/df.BLtrimmer.test.parameters.rda
data/df.BLtrimmer.test.results.rda
data/df.FAM.C.BHQ1.data.rda
data/df.abs.ROX.data.rda
data/df.abs.data.rda
data/df.abs.non2S.rda
data/df.ext.data.rda
data/df.fluor.data.rda
data/df.test.data.rda
data/df.test.parameters.rda
data/df.test.results.rda
data/js3042_HelixC_labeled.csv
data/js3047_ROX_data.csv
data/js5060_Helix_J_formatted.csv
data/js6040_multistate_data.csv
images/160871807825250947b60e91df28f89fd1c72343.svg
images/1cef19e0604ccc2b421c2e3988ec3e3f4f99a743.svg
images/222c69daaa7cfd4d29bcb9d6dc04f500461a345d.png
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images/b70990c25ddb7c17ddab81656cca9b743b4c4e6b.svg
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images/ddd3467aa596262c634f1a590ff11df68968ab51.svg
images/fc3d0144a83dce21514732a1bcb40d5971d1f520.svg
man/AB.qPCR.export.to.MeltR.csv.Rd
man/BLTrimmer.Rd
man/Helix.energy.Rd
man/calc.extcoeff.Rd
man/df.BLtrimmer.test.results.Rd
man/df.FAM.C.BHQ1.data.Rd
man/df.abs.ROX.data.Rd
man/df.abs.data.Rd
man/df.abs.non2S.Rd
man/df.ext.data.Rd
man/df.fluor.data.Rd
man/df.test.data.Rd
man/df.test.parameters.Rd
man/df.test.results.Rd
man/enumerate.states.Rd
man/meltR.A.Rd
man/meltR.A.derivative.Rd
man/meltR.A.model.Rd
man/meltR.A.nlme.Rd
man/meltR.F.Rd
man/meltR.F.model.Rd
man/o3a.to.MeltR.csv.Rd
man/read.o3a.Rd
man/state.drawer.Rd
tests/testthat.R
tests/testthat/test.BLtrimmer.R
tests/testthat/test.meltR.a.R
