meltR.A.nlme: Experimental code: not ready for use

In JPSieg/MeltR: Automated fitting of RNA/DNA absorbance melting curves and fluorescence binding isotherms in R

Experimental code: not ready for use

Description

Experimental code: not ready for use

Usage

meltR.A.nlme(
  data_frame,
  blank,
  NucAcid,
  concT = 90,
  Mmodel,
  Tmodel = "VantHoff",
  Save_results = "none",
  file_prefix = "Fit",
  file_path = getwd()
)

Arguments

data_frame	data_frame containing absorbance melting data
blank	the blank sample
NucAcid	A vector containing the Nucleic acid type and the sequences you are fitting.
concT	the temperature used to calculate the NucAcid concentration. Default = 90.
Mmodel	The molecular model you want to fit. Options: "Monomolecular.2State", "Monomolecular.3State", "Heteroduplex.2State", "Homoduplex.2State".
Tmodel	The thermodynamic model you want to fit. Options: "VantHoff". Default = "VantHoff".
Save_results	What results to save. Options: "all" to save PDF plots and ".csv" formated tables of parameters, "some" to save ".csv" formated tables of parameters, or "none" to save nothing.
file_prefix	Prefix that you want on the saved files.
file_path	Path to the directory you want to save results in.

Value

A list of data frames containing parameters from the fits and data for ploting the results with ggplot2.

JPSieg/MeltR documentation built on Feb. 4, 2024, 7:10 a.m.