enumerate.states: Enumerates all the possible base pairing states for a RNA...
In JPSieg/MeltR: Automated fitting of RNA/DNA absorbance melting curves and fluorescence binding isotherms in R
View source: R/enumerate.states.R
enumerate.states R Documentation
Enumerates all the possible base pairing states for a RNA helix and compiles a list of thermodynamic parameters for each state
Description
Generates all possible base pairing states for a helix. Assumes that strands are not allowed to slips.
Usage
enumerate.states(NucAcid = c("RNA", "F-CGAAAGGU", "ACCUUUCG-Q"))
Arguments
NucAcid
A vector containing RNA or DNA sequences. Flourophores and quenchers should be separated from the RNA sequnece with a dash. Example "c("RNA", "FAM-ACCUUUCG", "CGAAAGGU-BHQ1")"
Value
A list of data frames containing the sequence of the A strand, the sequence of the B strand, and a 1 if a BP is present or a 0 if no BP is present.e
JPSieg/MeltR documentation built on Feb. 4, 2024, 7:10 a.m.
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View source: R/enumerate.states.R
| enumerate.states | R Documentation |
Enumerates all the possible base pairing states for a RNA helix and compiles a list of thermodynamic parameters for each state
Description
Generates all possible base pairing states for a helix. Assumes that strands are not allowed to slips.
Usage
enumerate.states(NucAcid = c("RNA", "F-CGAAAGGU", "ACCUUUCG-Q"))
Arguments
NucAcid |
A vector containing RNA or DNA sequences. Flourophores and quenchers should be separated from the RNA sequnece with a dash. Example "c("RNA", "FAM-ACCUUUCG", "CGAAAGGU-BHQ1")" |
Value
A list of data frames containing the sequence of the A strand, the sequence of the B strand, and a 1 if a BP is present or a 0 if no BP is present.e
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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