Man pages for JPSieg/MeltR
Automated fitting of RNA/DNA absorbance melting curves and fluorescence binding isotherms in R
| AB.qPCR.export.to.MeltR.csv | Reformats an Applied Biosystems qPCR export file for fitting... |
| BLTrimmer | Auto-trim absorbance melting curves to obtain more accurate... |
| calc.extcoeff | Calculates extinction coefficients |
| df.abs.data | df.abs.data |
| df.abs.non2S | df.abs.non2S |
| df.abs.ROX.data | df.abs.ROX.data |
| df.BLtrimmer.test.results | df.BLtrimmer.test.results |
| df.ext.data | df.ext.data |
| df.FAM.C.BHQ1.data | df.FAM.C.BHQ1.data |
| df.fluor.data | df.fluor.data |
| df.test.data | df.test.data |
| df.test.parameters | df.test.parameters |
| df.test.results | df.test.results |
| enumerate.states | Enumerates all the possible base pairing states for a RNA... |
| Helix.energy | Calculates folding INN-HB parameters for a helix sequnece |
| meltR.A | Fits melting curves to obtain thermodynamic parameters |
| meltR.A.derivative | Takes the first and second derivatives of a melting curves |
| meltR.A.model | Models realistic absorbance melting curves |
| meltR.A.nlme | Experimental code: not ready for use |
| meltR.F | Fit fluorescence binding isotherms to obtain thermodynamic... |
| meltR.F.model | Fit fluorescence binding isotherms to obtain thermodynamic... |
| o3a.to.MeltR.csv | Pulls and combines data from a single wavelength from... |
| read.o3a | Reads an ".o3a" file into R |
| state.drawer | Draws all possible states for a specified double helix |
