Files in JRC-COMBINE/FORESEE
A Tool for the Systematic Comparison of Translational Drug Response Modeling Pipelines
.Rbuildignore
.gitignore
DESCRIPTION
FORESEE.Rproj
LICENSE
NAMESPACE
R/.DS_Store
R/BlackBoxFilter.R
R/CellResponseProcessor.R
R/DuplicationHandler.R
R/FeatureCombiner.R
R/FeaturePreprocessor.R
R/FeatureSelector.R
R/ForeseeTest.R
R/ForeseeTrain.R
R/Foreseer.R
R/GetCellResponseData.R
R/Homogenizer.R
R/Miscellaneous.R
R/SampleSelector.R
R/Validator.R
R/data.R
R/sysdata.rda
README.md
ReferenceManual.pdf
data-raw/CCLE/CCLE-raw/.gitignore
data-raw/CCLE/CCLEPreparer.R
data-raw/CTRP/CTRP-raw/.gitignore
data-raw/CTRP/CTRPPreparer.R
data-raw/DAEMEN/DAEMEN-raw/.gitignore
data-raw/DAEMEN/DaemenPreparer.R
data-raw/GAO/GAO-raw/.gitignore
data-raw/GAO/GaoPreparer.R
data-raw/GDSC/GDSC-raw/.gitignore
data-raw/GDSC/GDSCPreparer.R
data-raw/GSE18864/GSE18864-raw/.gitignore
data-raw/GSE18864/GSE18864Preparer.R
data-raw/GSE33072/GSE33072-raw/.gitignore
data-raw/GSE33072/GSE33072Preparer.R
data-raw/GSE51373/GSE51373-raw/.gitignore
data-raw/GSE51373/GSE51373Preparer.R
data-raw/GSE6434/GSE6434-raw/.gitignore
data-raw/GSE6434/GSE6434Preparer.R
data-raw/GSE9782/GSE9782-raw/.gitignore
data-raw/GSE9782/GSE9782Preparer.R
data-raw/WITKIEWICZ/WITKIEWICZ-raw/.gitignore
data-raw/WITKIEWICZ/WitkiewiczPreparer.R
data-raw/internalData/internalData-raw/HK_genes_entrez.rda
data-raw/internalData/internalData-raw/LM_genes_entrez.rda
data-raw/internalData/internalDataPreparer.R
data/.gitignore
man/BlackBoxFilter.Rd
man/CellResponseProcessor.Rd
man/CellResponseTypeAvailabilityCheck.Rd
man/CellorPatient.Rd
man/DuplicationHandler.Rd
man/FeatureCombiner.Rd
man/FeaturePreprocessor.Rd
man/FeatureSelector.Rd
man/ForeseeTest.Rd
man/ForeseeTrain.Rd
man/Foreseer.Rd
man/GetCellResponseData.Rd
man/Homogenizer.Rd
man/SampleSelector.Rd
man/Validator.Rd
man/listCellLines.Rd
man/listDrugs.Rd
man/listInputOptions.Rd
man/requireForesee.Rd
vignettes/DataOverview.Rnw
vignettes/Example1_BlackBoxFilter.jpeg
vignettes/Example2_Daemen.jpeg
vignettes/Example2_GDSC.jpeg
vignettes/Example3_TrainingTissueLung.jpeg
vignettes/Example4_Histology.jpeg
vignettes/Example5_CTRPvsGDSC.png
vignettes/Example5_PDX2Patient.png
vignettes/FORESEEScholar.bib
vignettes/introduction-to-FORESEE.Rmd
vignettes/introduction-to-FORESEE.bib
