JamesStimson/transnp: Transmission inference using SNP data
Version 0.1.0

Conduct transmission inference using SNP data from whole genome sequencing. Takes SNP alignments for clusters, together with sampling dates and some assumptions, and models transmission events and times.

Getting started

Package details

AuthorJames Stimson
MaintainerJames Stimson <[email protected]>
LicenseGPL-3
Version0.1.0
URL https://github.com/JamesStimson/transnp
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("JamesStimson/transnp")
JamesStimson/transnp documentation built on June 18, 2018, 2 a.m.