plotTransTreeSummary: Plot transmission network with posterior probabilities at or...
In JamesStimson/transnp: Transmission inference using SNP data
Description
Plot transmission network with posterior probabilities at or above given cutoff
Usage
1
2
plotTransTreeSummary(record, cutoff = 1, burnin = 0.5,
nodeColour = "lightblue", fontSize = 24)
Arguments
record
Posterior MCMC sample set from TransPhylo
cutoff
Minimum probabilty for edge to be included
burnin
Proportion of the MCMC output to be discarded as burnin
nodeColour
Colour for all nodes
fontSize
Font side for node labels
JamesStimson/transnp documentation built on May 30, 2019, 3:51 p.m.
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Description
Plot transmission network with posterior probabilities at or above given cutoff
Usage
1 2 | plotTransTreeSummary(record, cutoff = 1, burnin = 0.5,
nodeColour = "lightblue", fontSize = 24)
|
Arguments
record |
Posterior MCMC sample set from TransPhylo |
cutoff |
Minimum probabilty for edge to be included |
burnin |
Proportion of the MCMC output to be discarded as burnin |
nodeColour |
Colour for all nodes |
fontSize |
Font side for node labels |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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