plotInfectionDateDensity: Plot infection date density for chosen case
In JamesStimson/transnp: Transmission inference using SNP data
Description
Usage
Arguments
Value
Examples
Description
Plot infection date density for chosen case
Usage
1
plotInfectionDateDensity(singleRecord, index, burnin = 0.5, overlayDate)
Arguments
singleRecord
Posterior MCMC sample set from TransPhylo
index
Index of case
burnin
Proportion of the MCMC output to be discarded as burnin
overlayDate
Date to overlay on graph
Value
A vector of posterior infection dates
Examples
1
plotInfectionDateDensity(record, index, date)
JamesStimson/transnp documentation built on May 30, 2019, 3:51 p.m.
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Description Usage Arguments Value Examples
Description
Plot infection date density for chosen case
Usage
1 | plotInfectionDateDensity(singleRecord, index, burnin = 0.5, overlayDate)
|
Arguments
singleRecord |
Posterior MCMC sample set from TransPhylo |
index |
Index of case |
burnin |
Proportion of the MCMC output to be discarded as burnin |
overlayDate |
Date to overlay on graph |
Value
A vector of posterior infection dates
Examples
1 | plotInfectionDateDensity(record, index, date)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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