networkTPlot: Dynamic plot of the transmission network with edges weighted...

In JamesStimson/transnp: Transmission inference using SNP data

Description

Dynamic plot of the transmission network with edges weighted according to likelihood of transmission

Usage

networkTPlot(thisRecord, mcmcIndex = 1, burnin = 0.5,
  missLabel = "Unsampled", colours = c("lightblue", "orange"),
  fontSize = 24)

Arguments

thisRecord	Posterior MCMC sample set from TransPhylo
mcmcIndex	Sample set index of network to be displayed
burnin	Proportion of the MCMC output for edge weights to be discarded as burnin
missLabel	Label to be used for missing/unsampled cases
colours	Colours for sampled and unsampled nodes, vector of 2 colours

Examples

networkTPlot(record[[5]])

JamesStimson/transnp documentation built on May 30, 2019, 3:51 p.m.