estimate.tree: estimate a tree
In JamesStimson/transnp: Transmission inference using SNP data
Description
estimate a tree
Usage
1
2
estimate.tree(aln, maxit = 10000, addCols = TRUE, optNni = TRUE,
bf = basefreqs, ...)
Arguments
aln
Alignment in DNAbin format
maxit
Max number of iterations in optimisation
optNni
(TRUE) optimise the topology of the tree
...
further parameters for optim.pml
JamesStimson/transnp documentation built on May 30, 2019, 3:51 p.m.
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Description
estimate a tree
Usage
1 2 | estimate.tree(aln, maxit = 10000, addCols = TRUE, optNni = TRUE,
bf = basefreqs, ...)
|
Arguments
aln |
Alignment in DNAbin format |
maxit |
Max number of iterations in optimisation |
optNni |
(TRUE) optimise the topology of the tree |
... |
further parameters for optim.pml |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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