API for JamesStimson/transnp
Transmission inference using SNP data

Global functions
addAlignment Man page Source code
computeHost Source code
createMLTrees Man page Source code
createTimedTrees Man page Source code
estimate.tree Man page Source code
estimatetree Man page Source code
filterInfectedDate Man page Source code
filterPossibleWiw Man page Source code
filterTransPair Man page Source code
getGenerationTimes Man page Source code
getInfectionDates Man page Source code
getInfectionTimes Man page Source code
getLikelyInfectors Man page Source code
getMat Source code
getNumberUnsampled Man page Source code
getTTreeDistInfo Man page Source code
getTimesToSampling Man page Source code
infer_multiTTree_shareParam Man page Source code
move1 Source code
move2 Source code
move3 Source code
networkPlot Man page Source code
networkTPlot Man page Source code
plotGenerationTimeDensity Man page Source code
plotInfectionDateDensity Man page Source code
plotSampleTimeDensity Man page Source code
plotTransTreeSummary Man page Source code
plot_gen_times Man page Source code
plot_times_to_samp Man page Source code
plot_unsampled_cases Man page Source code
proposal Source code
setUpDates Man page Source code
simulTransTrees Man page Source code
treeAdd Source code
treeRem Source code
JamesStimson/transnp documentation built on Aug. 11, 2018, 11:15 p.m.