API for JamesStimson/transnp
Transmission inference using SNP data
| Global functions | |
|---|---|
| addAlignment | Man page |
| createMLTrees | Man page |
| createTimedTrees | Man page |
| estimate.tree | Man page |
| estimatetree | Man page |
| filterInfectedDate | Man page |
| filterPossibleWiw | Man page |
| filterTransPair | Man page |
| getGenerationTimes | Man page |
| getInfectionDates | Man page |
| getInfectionTimes | Man page |
| getLikelyInfectors | Man page |
| getNumberUnsampled | Man page |
| getTTreeDistInfo | Man page |
| getTimesToSampling | Man page |
| infer_multiTTree_shareParam | Man page |
| networkPlot | Man page |
| networkTPlot | Man page |
| plotGenerationTimeDensity | Man page |
| plotInfectionDateDensity | Man page |
| plotSampleTimeDensity | Man page |
| plotTransTreeSummary | Man page |
| plot_gen_times | Man page |
| plot_times_to_samp | Man page |
| plot_unsampled_cases | Man page |
| setUpDates | Man page |
| simulTransTrees | Man page |
