Files in JhuangLab/CytoTree

A Toolkit for Flow And Mass Cytometry Data

R/AllClasses.R R/AllMethods.R R/CytoTree-package.R R/RcppExports.R R/batch.R R/buildTree.R R/cluster.R R/destiny.R R/gating.R R/knn.R R/math.R R/pca.R R/plot2D.R R/plot3D.R R/plotCYT.R R/plotTree.R R/preprocessing.R R/pseudotime.R R/runDiff.R R/subsetCYT.R R/trajectory.R R/tsne.R R/umap.R R/utils.R README.md man/CYT-class.Rd man/CytoTree-package.Rd man/Rphenograph.Rd man/addMetaData.Rd man/buildTree.Rd man/changeMarker.Rd man/constraintMatrix.Rd man/correctBatchCYT.Rd man/createCYT.Rd man/defLeafCells.Rd man/defRootCells.Rd man/fetchCell.Rd man/fetchClustMeta.Rd man/fetchPlotMeta.Rd man/find_neighbors.Rd man/gatingMatrix.Rd man/plot2D.Rd man/plot3D.Rd man/plotBranchHeatmap.Rd man/plotCluster.Rd man/plotClusterHeatmap.Rd man/plotHeatmap.Rd man/plotMarkerDensity.Rd man/plotPieCluster.Rd man/plotPieTree.Rd man/plotPseudotimeDensity.Rd man/plotPseudotimeTraj.Rd man/plotTrajHeatmap.Rd man/plotTree.Rd man/plotViolin.Rd man/processingCluster.Rd man/runClara.Rd man/runCluster.Rd man/runDiff.Rd man/runDiffusionMap.Rd man/runExprsExtract.Rd man/runExprsMerge.Rd man/runFastPCA.Rd man/runHclust.Rd man/runKNN.Rd man/runKmeans.Rd man/runMclust.Rd man/runPhenograph.Rd man/runPseudotime.Rd man/runSOM.Rd man/runTSNE.Rd man/runUMAP.Rd man/runWalk.Rd man/show-CYT-method.Rd man/subsetCYT.Rd man/updateClustMeta.Rd man/updatePlotMeta.Rd vignettes/Tutorial.Rmd