plotPieTree: plot MST pie of CYT

In JhuangLab/CytoTree: A Toolkit for Flow And Mass Cytometry Data

Description

plot MST pie of CYT

Usage

plotPieTree(
  object,
  cex.size = 2,
  size.by.cell.number = TRUE,
  as.tree = FALSE,
  root.id = NULL,
  show.node.name = FALSE
)

Arguments

object	a CYT object
cex.size	numeric. size cex of the dot
size.by.cell.number	logical. Whether to size node by cell number
as.tree	logical. Whether to show node as tree
root.id	numeric. Root id of the tree, if as.tree is TRUE
show.node.name	logical. whether to show node name

Value

ggplot2 figure

Examples

cyt.file <- system.file("extdata/cyt.rds", package = "CytoTree")
cyt <- readRDS(file = cyt.file)

# Runs only have two or more stages
plotPieTree(cyt, cex.size = 1, size.by.cell.number = TRUE) 

JhuangLab/CytoTree documentation built on Nov. 16, 2020, 7:23 a.m.