constraintMatrix: constraintMatrix

In JhuangLab/CytoTree: A Toolkit for Flow And Mass Cytometry Data

Description

constraint FCS data by a provid cutoff

Usage

constraintMatrix(x, cutoff = 0.99, markers = NULL, method = "euclidean")

Arguments

x	matrix
cutoff	numeric. Cutoff of the constraint value
markers	character. Markers used in the calculation of constraint model.
method	character. the distance measure to be used. This must be one of "euclidean", "maximum", "manhattan", "canberra", "binary" or "minkowski".

Value

a matrix

Examples

mat <- matrix(runif(10000), nrow = 1000, ncol = 10)
colnames(mat) <- LETTERS[ seq_len(10)]
dim(mat)

mat <- constraintMatrix(mat)
dim(mat)

JhuangLab/CytoTree documentation built on Nov. 16, 2020, 7:23 a.m.