plotBranchHeatmap: Visualization heatmap of branch data of CYT

In JhuangLab/CytoTree: A Toolkit for Flow And Mass Cytometry Data

Description

Visualization heatmap of branch data of CYT

Usage

plotBranchHeatmap(
  object,
  color = colorRampPalette(c("blue", "white", "red"))(100),
  scale = "row",
  ...
)

Arguments

object	A CYT object
color	vector. Colors used in heatmap.
scale	character. Whether the values should be centered and scaled in either the row direction or the column direction, or none. Corresponding values are "row", "column" and "none"
...	options to pass on to the pheatmap function.

Value

ggplot2 figure

Examples

cyt.file <- system.file("extdata/cyt.rds", package = "CytoTree")
cyt <- readRDS(file = cyt.file)

plotBranchHeatmap(cyt)
plotBranchHeatmap(cyt, color = colorRampPalette(c("purple","white","yellow"))(100))
plotBranchHeatmap(cyt, cluster_row = FALSE)
plotBranchHeatmap(cyt, cluster_row = FALSE, cluster_col = FALSE)

JhuangLab/CytoTree documentation built on Nov. 16, 2020, 7:23 a.m.