changeMarker: Change marker used in the calculation of CYT
In JhuangLab/CytoTree: A Toolkit for Flow And Mass Cytometry Data
Description
Usage
Arguments
Value
Examples
Description
Change marker used in the calculation of CYT
Usage
1
changeMarker(object, markers = NULL, verbose = FALSE)
Arguments
object
A CYT object
markers
vector. Markers used in the calculation
of PCA, tSNE, diffusion map and UMAP.
verbose
logical. Whether to print calculation progress.
Value
A CYT object
Examples
1
2
3
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5
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7
8
9
cyt.file <- system.file("extdata/cyt.rds", package = "CytoTree")
cyt <- readRDS(file = cyt.file)
markers <- c("CD43", "CD34", "CD90", "CD45RA")
cyt <- changeMarker(cyt, markers = markers)
JhuangLab/CytoTree documentation built on Nov. 16, 2020, 7:23 a.m.
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Description Usage Arguments Value Examples
Description
Change marker used in the calculation of CYT
Usage
1 | changeMarker(object, markers = NULL, verbose = FALSE)
|
Arguments
object |
A CYT object |
markers |
vector. Markers used in the calculation of PCA, tSNE, diffusion map and UMAP. |
verbose |
logical. Whether to print calculation progress. |
Value
A CYT object
Examples
1 2 3 4 5 6 7 8 9 | cyt.file <- system.file("extdata/cyt.rds", package = "CytoTree")
cyt <- readRDS(file = cyt.file)
markers <- c("CD43", "CD34", "CD90", "CD45RA")
cyt <- changeMarker(cyt, markers = markers)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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