changeMarker: Change marker used in the calculation of CYT

Description Usage Arguments Value Examples

View source: R/utils.R

Description

Change marker used in the calculation of CYT

Usage

1
changeMarker(object, markers = NULL, verbose = FALSE)

Arguments

object

A CYT object

markers

vector. Markers used in the calculation of PCA, tSNE, diffusion map and UMAP.

verbose

logical. Whether to print calculation progress.

Value

A CYT object

Examples

1
2
3
4
5
6
7
8
9
cyt.file <- system.file("extdata/cyt.rds", package = "CytoTree")
cyt <- readRDS(file = cyt.file)

markers <- c("CD43", "CD34", "CD90", "CD45RA")

cyt <- changeMarker(cyt, markers = markers)


      

JhuangLab/CytoTree documentation built on Nov. 16, 2020, 7:23 a.m.