Files in JhuangLab/CytoTree
A Toolkit for Flow And Mass Cytometry Data
DESCRIPTION
NAMESPACE
NEWS
R/AllClasses.R
R/AllMethods.R
R/CytoTree-package.R
R/RcppExports.R
R/batch.R
R/buildTree.R
R/cluster.R
R/destiny.R
R/gating.R
R/knn.R
R/math.R
R/pca.R
R/plot2D.R
R/plot3D.R
R/plotCYT.R
R/plotTree.R
R/preprocessing.R
R/pseudotime.R
R/runDiff.R
R/subsetCYT.R
R/trajectory.R
R/tsne.R
R/umap.R
R/utils.R
README.md
inst/extdata/D0.FCS
inst/extdata/D10.FCS
inst/extdata/D2.FCS
inst/extdata/D4.FCS
inst/extdata/D6.FCS
inst/extdata/D8.FCS
inst/extdata/cyt.rds
inst/figures/algorithm.jpg
inst/figures/logo.png
inst/figures/logo.svg
man/CYT-class.Rd
man/CytoTree-package.Rd
man/Rphenograph.Rd
man/addMetaData.Rd
man/buildTree.Rd
man/changeMarker.Rd
man/constraintMatrix.Rd
man/correctBatchCYT.Rd
man/createCYT.Rd
man/defLeafCells.Rd
man/defRootCells.Rd
man/fetchCell.Rd
man/fetchClustMeta.Rd
man/fetchPlotMeta.Rd
man/find_neighbors.Rd
man/gatingMatrix.Rd
man/plot2D.Rd
man/plot3D.Rd
man/plotBranchHeatmap.Rd
man/plotCluster.Rd
man/plotClusterHeatmap.Rd
man/plotHeatmap.Rd
man/plotMarkerDensity.Rd
man/plotPieCluster.Rd
man/plotPieTree.Rd
man/plotPseudotimeDensity.Rd
man/plotPseudotimeTraj.Rd
man/plotTrajHeatmap.Rd
man/plotTree.Rd
man/plotViolin.Rd
man/processingCluster.Rd
man/runClara.Rd
man/runCluster.Rd
man/runDiff.Rd
man/runDiffusionMap.Rd
man/runExprsExtract.Rd
man/runExprsMerge.Rd
man/runFastPCA.Rd
man/runHclust.Rd
man/runKNN.Rd
man/runKmeans.Rd
man/runMclust.Rd
man/runPhenograph.Rd
man/runPseudotime.Rd
man/runSOM.Rd
man/runTSNE.Rd
man/runUMAP.Rd
man/runWalk.Rd
man/show-CYT-method.Rd
man/subsetCYT.Rd
man/updateClustMeta.Rd
man/updatePlotMeta.Rd
src/RcppExports.cpp
src/jaccard_coeff.cpp
vignettes/Tutorial.Rmd
