README.md
In JiekaiLab/SOT: Single-cell Orientation Tracing
What is SOT?
Single cell orientation tracing (SOT) is analysis framework for single cell RNA-seq data. SOT searches co-expreesed gene groups that represent abstract biological functions. The gene groups can be used to discover cell types and reconstruct developmental trajectory.
Workflow
Install package
To install development version from GitHub, use the devtools package
install.packages("devtools")
devtools::install_github("JiekaiLab/SOT")
Vignette
This vignette shows the analysis of reprogramming data described in Resolving Cell Fate Decisions during Somatic Cell Reprogramming by Single-Cell RNA-seq, Molecular Cell. doi: https://doi.org/10.1016/j.molcel.2019.01.042
Contributing
We welcome any bug reports, enhancement requests, and other contributions. To submit a bug report or enhancement request, please put it in issues. For more substantial contributions, please fork this repo, push your changes to your fork, and submit a pull request with a good commit message. For more general discussions or troubleshooting, please email lin_lihui@gibh.ac.cn.
JiekaiLab/SOT documentation built on Jan. 25, 2022, 3:14 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
What is SOT?
Single cell orientation tracing (SOT) is analysis framework for single cell RNA-seq data. SOT searches co-expreesed gene groups that represent abstract biological functions. The gene groups can be used to discover cell types and reconstruct developmental trajectory.
Workflow
Install package
To install development version from GitHub, use the devtools package
install.packages("devtools")
devtools::install_github("JiekaiLab/SOT")
Vignette
This vignette shows the analysis of reprogramming data described in Resolving Cell Fate Decisions during Somatic Cell Reprogramming by Single-Cell RNA-seq, Molecular Cell. doi: https://doi.org/10.1016/j.molcel.2019.01.042
Contributing
We welcome any bug reports, enhancement requests, and other contributions. To submit a bug report or enhancement request, please put it in issues. For more substantial contributions, please fork this repo, push your changes to your fork, and submit a pull request with a good commit message. For more general discussions or troubleshooting, please email lin_lihui@gibh.ac.cn.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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