Description Usage Arguments Value
AP clustering on genes and calculate the eigengenes of each cluster
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sce |
A SingleCellExperiment object or matrix. |
datatype |
Specify the data type in sce for filtering. |
genes.use |
Specify the genes to perform clustering. |
projections |
Whether to calculate reconstructions and scores using the L1 norm ("l1") the L2 norm ("l2"). |
sim |
Prior defined similarty matrix of genes for clustering - default is NULL. |
method |
The method to calculate the affinity matrix, can be pearson (Defult) or cosine. |
center |
Center the expression before performing PCA - default is FALSE. |
scale. |
Scale the expression before performing PCA - default is FALSE. |
normalize.score |
Wheter to normalize the pc1 score. |
minsize |
Minimum cluster size. |
ncore |
Number of cores used for parallel. |
... |
Additional arguments passed on to |
Cluster labels of genes
Basic stats of clusters
Eigengenes
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