ADtest: Aderson-Darling test

In JiekaiLab/SOT: Single-cell Orientation Tracing

Description

Test if gene expression in different sampling time points come from a common population

Usage

ADtest(
  sce,
  datatype = "logcounts",
  condition,
  useLevels = NULL,
  genes.use = "find.hvgs",
  sample.cells = 1000,
  adj.method = "none",
  thr.padj = 0.001,
  r.implement = FALSE,
  ncore = 4
)

Arguments

sce	SingleCellExperiment object.
datatype	Sepcify the data type in sce for filtering.
condition	Conditions corresponding to cells.
useLevels	Subset conditions for test - default is NULL.
genes.use	A logical vector in rowData to specify the genes for calculation.
sample.cells	Sampling cell number in each condition to speed up testing.
adj.method	p-value correction method. See p.adjust for more detail.
r.implement	Whether to use R implement of AD test. If FALSE, I will use anderson_ksamp function in scipy.
ncore	Number of cores used for parallel.

Value

Adjusted p-value of Anderson-Darling test.

JiekaiLab/SOT documentation built on Jan. 25, 2022, 3:14 p.m.