plot_embed: Heatmap of the reduced dimension data

In JiekaiLab/SOT: Single-cell Orientation Tracing

Description

Heatmap of the reduced dimension data

Usage

plot_embed(
  sce,
  usedEmbed,
  k = 8,
  method = "complete",
  filename = NA,
  cells.use = NULL,
  vars.use = NULL,
  anno_col = NULL,
  color_scale = NULL,
  cmap = NULL,
  cluster_row = TRUE,
  ...
)

Arguments

sce	A SingleCellExperiment object.
usedEmbed	Specify the reduce dimension type for construct network. See current avaible embedding by reducedDimNames.
k	Number of clusters.
method	Clustering method.
filename	Figure name.
anno_col	Characters to specify annotate conditions.
color_scale	Customer color scale for each condition.
cmap	Color map.

Value

Clustering result.

JiekaiLab/SOT documentation built on Jan. 25, 2022, 3:14 p.m.