BuildSCE: Build SingleCellExperiment object.

In JiekaiLab/SOT: Single-cell Orientation Tracing

Description

Build SingleCellExperiment object.

Usage

BuildSCE(
  counts = NULL,
  normcounts = NULL,
  logcounts = NULL,
  cpm = NULL,
  tpm = NULL,
  scaleData = NULL,
  trim = 0.1,
  sparse = TRUE,
  ...
)

Arguments

counts	Matrix like or data.frame object of counts with genes by cells.
normcounts	Analogous to counts.
logcounts	Analogous to counts.
cpm	Analogous to counts.
tpm	Analogous to counts.
scaleData	Analogous to counts.
trim	Fraction of outlier values (on each side) to be trimmed on each side.
sparse	logical or NULL, specifying if the result should be sparse or not.
...	Additional arguments passed on to SingleCellExperiment.

JiekaiLab/SOT documentation built on Jan. 25, 2022, 3:14 p.m.