compare_expr: Compare gene expression

In JiekaiLab/SOT: Single-cell Orientation Tracing

Description

Compare gene expression.

Usage

compare_expr(
  sce,
  genes,
  trunk = NULL,
  branch = NULL,
  color = NULL,
  linestyle = NULL,
  datatype = "logcounts",
  stateid = "branch",
  trajectory = "trajectory",
  lw = 2,
  span = 0.6,
  ...
)

Arguments

sce	Expression matrix.
genes	Use the mean of bincells for smoothing.
trunk	Normalize the smoothed value to 0-1.
ncore	ncores for parallel.

Value

Smoothing expression.

JiekaiLab/SOT documentation built on Jan. 25, 2022, 3:14 p.m.