cov.calc.gene: Calculate covariance structure for gene over pseudotimes and...

In JohnReid/DeLorean: Estimates Pseudotimes for Single Cell Expression Data

Description

Calculate covariance structure for gene over pseudotimes and test inputs.

Usage

cov.calc.gene(dl, gene.idx, cov.fn = cov.matern.32,
  tau = tau.for.sample(dl), include.test = TRUE,
  psi = sampled.gene.param(dl, gene.idx, "psi"),
  omega = sampled.gene.param(dl, gene.idx, "omega"))

Arguments

dl	de.lorean object
gene.idx	Gene index
cov.fn	Covariance function (defaults to cov.matern.32)
tau	The pseudotimes to use
include.test	Also include the pseudotimes for the test inputs
psi	Temporal variation
omega	Noise

JohnReid/DeLorean documentation built on Sept. 27, 2021, 5:45 a.m.