API for JohnReid/DeLorean
Estimates Pseudotimes for Single Cell Expression Data

Global functions
DeLorean Man page
DeLorean-package Man page
Rhat.plot Man page Source code
adjust.by.cell.sizes Man page Source code
adjust.predictions Source code
alpha.for.rug Man page Source code
analyse.noise.levels Man page Source code
analyse.variance Man page Source code
anders.huber.cell.sizes Man page Source code
aov.dl Man page Source code
avg.par.samples Man page Source code
bind.sample Source code
calc.inducing.pseudotimes Man page Source code
calc.roughness Man page Source code
cast.expr Source code
cell.levels Source code
centralise Man page Source code
check.de.lorean.consistent Source code
cmp.profiles.plot Man page Source code
compile.model Man page Source code
cov.all.genes.conditioned Man page Source code
cov.calc.dists Man page Source code
cov.calc.dl.dists Man page Source code
cov.calc.gene Man page Source code
cov.calc.gene.conditioned Man page Source code
cov.fn.for Source code
cov.matern.32 Man page Source code
cov.periodise Man page Source code
create.ordering.ll.fn Man page Source code
de.lorean Man page Source code
de.lorean.stylesheet Man page Source code
deduplicate.orderings Source code
default.num.cores Man page Source code
dim.de.lorean Man page Source code
estimate.cell.sizes Man page Source code
estimate.hyper Man page Source code
even.tau.spread Source code
examine.convergence Man page Source code
expected.sample.var Man page Source code
expr.data.plot Man page Source code
filter.cells Man page Source code
filter.genes Man page Source code
filter_cells Man page Source code
filter_genes Man page Source code
find.best.tau Man page Source code
find.good.ordering Man page Source code
find.smooth.tau Man page Source code
fit.dl Man page Source code
fit.held.out Man page Source code
fit.model Man page Source code
fit.model.sample Man page Source code
fit.model.vb Man page Source code
gaussian.condition Man page Source code
gene.covariances Man page Source code
gene.levels Source code
geom.series Source code
get.posterior.mean Man page Source code
gp.log.marg.like Man page Source code
gp.predict Man page Source code
gp.predictions.df Man page Source code
guo.cell.meta Man page
guo.expr Man page
guo.gene.meta Man page
held.out.melt Man page Source code
held.out.posterior Man page Source code
held.out.posterior.by.variation Man page Source code
held.out.posterior.filter Man page Source code
held.out.posterior.join Man page Source code
held.out.select.genes Man page Source code
induced.gene.prec Source code
inducing.covariance Man page Source code
init.chain.sample.tau Source code
init.orderings.vs.pseudotimes.plot Man page Source code
is.de.lorean Man page Source code
join.tau.samples Source code
knit.report Man page Source code
kouno.cell.meta Man page
kouno.expr Man page
kouno.gene.meta Man page
make.chain.init.fn Source code
make.fit.valid Man page Source code
make.init.fn Man page Source code
make.predictions Man page Source code
marg.like.plot Man page Source code
match.range Source code
melt.expr Man page Source code
model.parameter.dimensions Source code
mutate.profile.data Man page Source code
onLoad Source code
optimise.best.sample Man page Source code
optimise.sample Source code
ordering.block.move Man page Source code
ordering.improve Man page Source code
ordering.invert Man page Source code
ordering.is.valid Man page Source code
ordering.maximise Man page Source code
ordering.metropolis.hastings Man page Source code
ordering.move Man page Source code
ordering.random.block.move Man page Source code
ordering.random.move Man page Source code
ordering.test.score Man page Source code
orderings.plot Man page Source code
partition.de.lorean Man page Source code
permute.df Man page Source code
permuted.roughness Man page Source code
plot.add.expr Man page Source code
plot.add.mean.and.variance Man page Source code
plot.de.lorean Man page Source code
plot.held.out.posterior Man page Source code
prepare.for.stan Man page Source code
print.de.lorean Man page Source code
process.posterior Man page Source code
profiles.plot Man page Source code
pseudotime.plot Man page Source code
pseudotimes.from.orderings Man page Source code
pseudotimes.pair.plot Man page Source code
report.file Man page Source code
rev.order.if.better Source code
roughness.of.permutations Man page Source code
roughness.of.sample Man page Source code
roughness.test Man page Source code
roughnesses.plot Man page Source code
sample.genes.and.cells Source code
sample.iters Source code
sample.melter Source code
sample.parameters Source code
sample.per.capture Source code
sampled.gene.param Source code
seriation.find.orderings Man page Source code
summary.de.lorean Source code
tau.for.sample Source code
tau.offsets.plot Man page Source code
test.fit Man page Source code
test.mh Man page Source code
test.robustness.de.lorean Man page Source code
update.levels Source code
windram.cell.meta Man page
windram.expr Man page
windram.gene.meta Man page
JohnReid/DeLorean documentation built on July 28, 2017, 11:26 a.m.