estimate.cell.sizes: Estimate the cell sizes. We only consider genes that are...
In JohnReid/DeLorean: Estimates Pseudotimes for Single Cell Expression Data
Description
Estimate the cell sizes. We only consider genes that are expressed in
a certain proportion of cells.
Usage
1
2
estimate.cell.sizes(dl, cell.prop = 0.5, expr.threshold = 0,
by.capture = TRUE)
Arguments
dl
de.lorean object.
cell.prop
The proportion of cells a gene must be expressed in to be
considered for cell size estimation
expr.threshold
The threshold above which we consider a gene to be expressed
by.capture
Estimate the cell sizes by considering the cells at each
capture time separately
JohnReid/DeLorean documentation built on Sept. 27, 2021, 5:45 a.m.
R Package Documentation
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Description
Estimate the cell sizes. We only consider genes that are expressed in a certain proportion of cells.
Usage
1 2 | estimate.cell.sizes(dl, cell.prop = 0.5, expr.threshold = 0,
by.capture = TRUE)
|
Arguments
dl |
de.lorean object. |
cell.prop |
The proportion of cells a gene must be expressed in to be considered for cell size estimation |
expr.threshold |
The threshold above which we consider a gene to be expressed |
by.capture |
Estimate the cell sizes by considering the cells at each capture time separately |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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