plot.de.lorean: Various DeLorean object plots

In JohnReid/DeLorean: Estimates Pseudotimes for Single Cell Expression Data

Description

Various DeLorean object plots

Usage

## S3 method for class 'de.lorean'
plot(x, type = "profiles", ...)

Arguments

x	de.lorean object
type	Type of plot: 'expr.data': The expression data plotted by capture time. See expr.data.plot. 'Rhat': hat{R} convergence statistics See Rhat.plot. 'pseudotime': Pseudotimes in best posterior sample See pseudotime.plot. 'profiles': Gene expression profiles for best posterior sample See profiles.plot. 'tau.offsets': Offsets of pseudotimes to assess the prior See tau.offsets.plot. 'marg.like': Plot the posterior of the marginal likelihoods for individual genes. See marg.like.plot. 'roughnesses': Roughnesses of the pseudotime posterior See roughnesses.plot. 'init.vs.pseudotimes': Plot the initialisations used against the pseudotimes estimated See init.orderings.vs.pseudotimes.plot.
...	Extra arguments to plot function

JohnReid/DeLorean documentation built on Sept. 27, 2021, 5:45 a.m.