API for Jorisvansteenbrugge/TcT
Trait-based Comparative Transcriptomics
| Global functions | |
|---|---|
| .Calc_Avg_Zscore_Module | Source code |
| .Calc_Jaccard | Source code |
| .Calc_Jaccard_Module | Source code |
| .Convert_zscores | Source code |
| .Get_Covered_Genomes | Source code |
| .onDetach | Source code |
| .onLoad | Source code |
| Add Custom Trait | Man page |
| Add_BRITE_DB | Source code |
| Add_Custom_Trait | Man page Source code |
| Association_Rules | Man page Source code |
| Calc_Pairwise_Annotation_Distance | Man page Source code |
| Calc_Z_scores | Man page Source code |
| Calculate Association Rules | Man page |
| Combine_databases | Source code |
| Create.Rank.Columns | Man page Source code |
| Create_Filtered_SBS_Matrix | Man page Source code |
| Draw Expression | Man page |
| Draw_Expression | Man page Source code |
| Export_EdgeList | Source code |
| Filter | Man page Source code |
| Generate_empty_output | Source code |
| GetTraitAttributes | Man page Source code |
| Get_annotation_presence_absence | Man page Source code |
| Get_matrix_features | Man page Source code |
| Get_module_categories | Man page Source code |
| Get_non_unique_annotations | Source code |
| Get_trait_pa | Source code |
| Get_trait_presence_absence | Source code |
| Go Fish | Man page |
| Go_Fish | Man page |
| Identify Trait Attributes | Man page |
| Identify_Significance_Trait | Man page |
| Identify_Trait_Attributes | Man page Source code |
| Individual Random Background distributions | Man page |
| Individual_Annotation_Background | Man page Source code |
| Model_Module | Man page |
| NRED | Source code Source code |
| Normalization | Man page Source code |
| Normalize | Man page Source code |
| Normalize_by_bin | Source code |
| PC | Source code Source code |
| Pairwise comparison of Annotations | Man page |
| Pairwise_Distance | Source code |
| Plot Background Individual Genes | Man page |
| Plot Background Modules | Man page |
| Plot Metric Comparison | Man page |
| Plot Trait Attribute | Man page |
| Plot_Background_Individual_Genes | Man page Source code |
| Plot_Background_Modules | Man page Source code |
| Plot_Metric_Comparison | Man page Source code |
| Plot_Model_Module | Man page |
| Plot_Pathway_modules | Source code |
| Plot_Redundancy_Traits | Man page |
| Plot_Trait_Attribute_Expression | Man page Source code |
| Plot_Trait_Expression | Source code |
| Pre_process_input | Man page Source code |
| Prune Trait Attributes | Man page |
| Prune.Genes.Zeros | Source code |
| Prune_Trait_Attributes | Man page Source code |
| Prune_bins | Source code |
| Random Background distributions of Traits | Man page |
| Random.Annotated.Genes.bkgd | Man page Source code |
| Random.Annotated.Genes.bkgd.new | Source code |
| Random.Genes.bkgd | Man page Source code |
| Random.Identical.Annotated.Genes.bkgd | Man page Source code |
| Random.Identical.Annotated.Genes.bkgd.new | Source code |
| Random_Trait_Background | Man page Source code |
| Sample_random_genes_identical_annotation | Source code |
| Shared_traits | Source code |
| Traitattributes_To_Sbsmatrix | Man page Source code |
| calcmfrow | Source code |
| getMetricDist | Man page Source code |
| getMetricDistModule | Man page Source code |
| get_genomes_per_attribute | Source code |
| get_num_genes | Source code |
| get_num_genomes | Source code Source code |
| get_sig_tas | Source code Source code |
| get_tas | Source code Source code |
| gradient | Man page |
| gradient.legend | Man page |
| integer.to.colors | Man page |
| integers.to.colors | Man page |
| load_obj | Source code Source code |
| number.to.color | Man page |
| number.to.colors | Man page |
| numberToColor | Man page |
| numberToColors | Man page |
| numbers.to.colors | Man page |
| random | Source code |
| string.to.color | Man page |
| string.to.colors | Man page |
| stringToColors | Man page |
| stringtocolor | Man page |
