API for Jorisvansteenbrugge/TcT
Trait-based Comparative Transcriptomics

Global functions
.Calc_Avg_Zscore_Module Source code
.Calc_Jaccard Source code
.Calc_Jaccard_Module Source code
.Convert_zscores Source code
.Get_Covered_Genomes Source code
.onDetach Source code
.onLoad Source code
Add Custom Trait Man page
Add_BRITE_DB Source code
Add_Custom_Trait Man page Source code
Association_Rules Man page Source code
Calc_Pairwise_Annotation_Distance Man page Source code
Calc_Z_scores Man page Source code
Calculate Association Rules Man page
Combine_databases Source code
Create.Rank.Columns Man page Source code
Create_Filtered_SBS_Matrix Man page Source code
Draw Expression Man page
Draw_Expression Man page Source code
Export_EdgeList Source code
Filter Man page Source code
Generate_empty_output Source code
GetTraitAttributes Man page Source code
Get_annotation_presence_absence Man page Source code
Get_matrix_features Man page Source code
Get_module_categories Man page Source code
Get_non_unique_annotations Source code
Get_trait_pa Source code
Get_trait_presence_absence Source code
Go Fish Man page
Go_Fish Man page
Identify Trait Attributes Man page
Identify_Significance_Trait Man page
Identify_Trait_Attributes Man page Source code
Individual Random Background distributions Man page
Individual_Annotation_Background Man page Source code
Model_Module Man page
NRED Source code Source code
Normalization Man page Source code
Normalize Man page Source code
Normalize_by_bin Source code
PC Source code Source code
Pairwise comparison of Annotations Man page
Pairwise_Distance Source code
Plot Background Individual Genes Man page
Plot Background Modules Man page
Plot Metric Comparison Man page
Plot Trait Attribute Man page
Plot_Background_Individual_Genes Man page Source code
Plot_Background_Modules Man page Source code
Plot_Metric_Comparison Man page Source code
Plot_Model_Module Man page
Plot_Pathway_modules Source code
Plot_Redundancy_Traits Man page
Plot_Trait_Attribute_Expression Man page Source code
Plot_Trait_Expression Source code
Pre_process_input Man page Source code
Prune Trait Attributes Man page
Prune.Genes.Zeros Source code
Prune_Trait_Attributes Man page Source code
Prune_bins Source code
Random Background distributions of Traits Man page
Random.Annotated.Genes.bkgd Man page Source code
Random.Annotated.Genes.bkgd.new Source code
Random.Genes.bkgd Man page Source code
Random.Identical.Annotated.Genes.bkgd Man page Source code
Random.Identical.Annotated.Genes.bkgd.new Source code
Random_Trait_Background Man page Source code
Sample_random_genes_identical_annotation Source code
Shared_traits Source code
Traitattributes_To_Sbsmatrix Man page Source code
calcmfrow Source code
getMetricDist Man page Source code
getMetricDistModule Man page Source code
get_genomes_per_attribute Source code
get_num_genes Source code
get_num_genomes Source code Source code
get_sig_tas Source code Source code
get_tas Source code Source code
gradient Man page
gradient.legend Man page
integer.to.colors Man page
integers.to.colors Man page
load_obj Source code Source code
number.to.color Man page
number.to.colors Man page
numberToColor Man page
numberToColors Man page
numbers.to.colors Man page
random Source code
string.to.color Man page
string.to.colors Man page
stringToColors Man page
stringtocolor Man page
Jorisvansteenbrugge/TcT documentation built on Sept. 26, 2022, 6:50 a.m.