Global functions | |
---|---|
.Calc_Avg_Zscore_Module | Source code |
.Calc_Jaccard | Source code |
.Calc_Jaccard_Module | Source code |
.Convert_zscores | Source code |
.Get_Covered_Genomes | Source code |
.onDetach | Source code |
.onLoad | Source code |
Add Custom Trait | Man page |
Add_BRITE_DB | Source code |
Add_Custom_Trait | Man page Source code |
Association_Rules | Man page Source code |
Calc_Pairwise_Annotation_Distance | Man page Source code |
Calc_Z_scores | Man page Source code |
Calculate Association Rules | Man page |
Combine_databases | Source code |
Create.Rank.Columns | Man page Source code |
Create_Filtered_SBS_Matrix | Man page Source code |
Draw Expression | Man page |
Draw_Expression | Man page Source code |
Export_EdgeList | Source code |
Filter | Man page Source code |
Generate_empty_output | Source code |
GetTraitAttributes | Man page Source code |
Get_annotation_presence_absence | Man page Source code |
Get_matrix_features | Man page Source code |
Get_module_categories | Man page Source code |
Get_non_unique_annotations | Source code |
Get_trait_pa | Source code |
Get_trait_presence_absence | Source code |
Go Fish | Man page |
Go_Fish | Man page |
Identify Trait Attributes | Man page |
Identify_Significance_Trait | Man page |
Identify_Trait_Attributes | Man page Source code |
Individual Random Background distributions | Man page |
Individual_Annotation_Background | Man page Source code |
Model_Module | Man page |
NRED | Source code Source code |
Normalization | Man page Source code |
Normalize | Man page Source code |
Normalize_by_bin | Source code |
PC | Source code Source code |
Pairwise comparison of Annotations | Man page |
Pairwise_Distance | Source code |
Plot Background Individual Genes | Man page |
Plot Background Modules | Man page |
Plot Metric Comparison | Man page |
Plot Trait Attribute | Man page |
Plot_Background_Individual_Genes | Man page Source code |
Plot_Background_Modules | Man page Source code |
Plot_Metric_Comparison | Man page Source code |
Plot_Model_Module | Man page |
Plot_Pathway_modules | Source code |
Plot_Redundancy_Traits | Man page |
Plot_Trait_Attribute_Expression | Man page Source code |
Plot_Trait_Expression | Source code |
Pre_process_input | Man page Source code |
Prune Trait Attributes | Man page |
Prune.Genes.Zeros | Source code |
Prune_Trait_Attributes | Man page Source code |
Prune_bins | Source code |
Random Background distributions of Traits | Man page |
Random.Annotated.Genes.bkgd | Man page Source code |
Random.Annotated.Genes.bkgd.new | Source code |
Random.Genes.bkgd | Man page Source code |
Random.Identical.Annotated.Genes.bkgd | Man page Source code |
Random.Identical.Annotated.Genes.bkgd.new | Source code |
Random_Trait_Background | Man page Source code |
Sample_random_genes_identical_annotation | Source code |
Shared_traits | Source code |
Traitattributes_To_Sbsmatrix | Man page Source code |
calcmfrow | Source code |
getMetricDist | Man page Source code |
getMetricDistModule | Man page Source code |
get_genomes_per_attribute | Source code |
get_num_genes | Source code |
get_num_genomes | Source code Source code |
get_sig_tas | Source code Source code |
get_tas | Source code Source code |
gradient | Man page |
gradient.legend | Man page |
integer.to.colors | Man page |
integers.to.colors | Man page |
load_obj | Source code Source code |
number.to.color | Man page |
number.to.colors | Man page |
numberToColor | Man page |
numberToColors | Man page |
numbers.to.colors | Man page |
random | Source code |
string.to.color | Man page |
string.to.colors | Man page |
stringToColors | Man page |
stringtocolor | Man page |
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