Model_Module: Model Module

In Jorisvansteenbrugge/TcT: Trait-based Comparative Transcriptomics

Model Module

Description

Creates a bar plot of pairwise comparisons between the traits of a model genome. If a distance is less than the 99 The bar is presented in dark grey.

Usage

Model_Module(
  RNAseq.data,
  trait.attributes,
  Model_Bin,
  Module_Names,
  bkgd.traits
)

Arguments

RNAseq.data	Collection of multple components, include RNA seq data, annotations, etc.
trait	character string with the name of a trait.
Yrange	It is optional to provide a Yrange

Author(s)

BO Oyserman

See Also

Pre_process_input for the full list of parameters, https://github.com/Jorisvansteenbrugge/TcT/wiki/The-RNAseq.data-object for more information.

Examples

Module_Model_List <- Model_Module(RNAseq.data, trait.attributes, '39', Module_Names, c(-2.5,2.5), bkgd.traits)
## Not run: 
Model_Bin <- 39
Bin_Order <- c(48,32,31,29,22,11,39,16,53,45,42,28,20,25,19,8,36,26,17)
Yrange <- c(-2.5,2.5)
Module_Names_ATP_synthesis <- c("M00144","M00143","M00146","M00147","M00149","M00150","M00148","M00162","M00151","M00152","M00154","M00155","M00153","M00417","M00416","M00156","M00157","M00159")

## End(Not run)

Jorisvansteenbrugge/TcT documentation built on Sept. 26, 2022, 6:50 a.m.