Add-Custom-Trait | Add Custom Trait |
Calculate-Association-Rules | Calculate Association Rules |
Calc_Z_scores | Calculate Z scores of individual background distributions |
Create_Filtered_SBS_Matrix | Create_Filtered_SBS_Matrix |
Create.Rank.Columns | Add a ranking collumn for each sample that holds the negative... |
Draw-Expression | Draw_Expression |
Filter | Remove data rows that have a stdev of zero. |
Get_annotation_presence_absence | Calculate which KO is present for each Bin |
Get_matrix_features | Automatically identify features based on column names |
getMetricDist | Get Metric Dist |
getMetricDistModule | Get Metric Dist module |
Get_module_categories | Get module categories |
GetTraitAttributes | GetTraitAttributes |
Go-Fish | Identify whether an annotation term has a certain expression... |
gradient.legend | Create a gradiented legend |
Identify_Significance_Trait | Identify_Significance_Trait |
Identify-Trait-Attributes | Identify Trait Attributes |
Individual-Random-Background-distributions | Individual Random Background distributions |
Model_Module | Model Module |
Normalization | Normalize RNAseq data |
Normalize | Normalized RNAseq raw read counts |
number.to.colors | Convert from numbers to colors |
Pairwise-comparison-of-Annotations | Create an all versus all comparison for each annotation term |
Plot-Background-Individual-Genes | Plot_Background_Individual_Genes |
Plot-Background-Modules | Plot_Background_Modules |
Plot-Metric-Comparison | Plot_Metric_Comparison |
Plot_Model_Module | Plot_Model_Module |
Plot_Redundancy_Traits | Plot_Redundancy_Traits |
Plot-Trait-Attribute | Plot Trait Attribute |
Pre_process_input | Pre-processing of RNAseq data |
Prune-Trait-Attributes | Prune Trait Attributes |
Random.Annotated.Genes.bkgd | Background distribution of any two random genes with an... |
Random-Background-distributions-of-Traits | Generate a background distibution of composite Z scores |
Random.Genes.bkgd | Background distribution of any two random genes in two random... |
Random.Identical.Annotated.Genes.bkgd | Background distribution of two random random genes with the... |
string.to.colors | Convert between strings to colors |
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