Pairwise-comparison-of-Annotations: Create an all versus all comparison for each annotation term
In Jorisvansteenbrugge/TcT: Trait-based Comparative Transcriptomics

Pairwise comparison of Annotations

R Documentation

Create an all versus all comparison for each annotation term

Description

For each annotation term, a comparison is done for each genome versus all other genomes, 1 versus 1.

Usage

Calc_Pairwise_Annotation_Distance(
  RNAseq.data,
  annotation.db,
  distance.metrics,
  bkgd.individual.Zscores,
  show.progress = F,
  threads = 4
)

Arguments

`RNAseq.data`	Collection of multple components, include RNA seq data, annotations, etc. See `Pre_process_input` for the full list.
`annotation.db`	List containing a dictionary like structure with trait as names and annotation as values.
`distance.metrics`	Named list containing distance functions as values.
`bkgd.individual.Zscores`	Collection of multple components, include RNA seq data, annotations, etc. See `Pre_process_input` for the full list.
`show.progress`	Boolean indicating werther or not to show progress.
`threads`	The number of cpu threads to run the function in parallel .