Individual-Random-Background-distributions: Individual Random Background distributions

In Jorisvansteenbrugge/TcT: Trait-based Comparative Transcriptomics

Individual Random Background distributions

Description

A function that creates three different random background distributions For each of them, two different genomes are sampled. Then for the first distribution, from each of the two genomes, a random gene is selected. For the second distribution, from each of the two genomes, a random gene that has an annotation is selected. For the third distribution, an annotation is selected that is present in both genomes. Then for each of the two genomes, a gene is selected with that annotation.

Usage

Individual_Annotation_Background(
  RNAseq.data,
  N = 1000,
  threads = 3,
  metrics = list(PC = PC, NRED = NRED)
)

Arguments

N	Number of iterations
threads	Number of cpu cores to be used
metrics	Named list containing possibly multiple functions for distance metrics

Author(s)

JJM van Steenbrugge BO Oyserman

Jorisvansteenbrugge/TcT documentation built on Sept. 26, 2022, 6:50 a.m.