Kan-E/rnaseqviewer: Toolkit for automated, systematic, and integrated RNA-seq DEG analysis
`rnaseqviewer` is an R package for automated, systematic, and integrated RNA-seq differential expression analysis. It has functions for DEG analysis of single dataset and intergrated DEG analysis of multiple DEG analysis. `deseq2` and `ebseq` are functions for the DEG detection. `Omics_overview`, `DEG_overview`, and `multiDEG_overview` are functions for systematic visualization of clustering and DEG analysis. `vennd`, `ORA`, `AutoExtraction` and `int_heatmap` are functions for intergrated functional analysis. It also has two useful functions, `kmeansClustering` for k-means clustering analysis, and `GeneSetConversion` for gene symbol conversion from human to mouse.
Getting started
Browse package contents
Package details |
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| Author | Kan Etoh |
| Bioconductor views | AnnotationDbi ComplexHeatmap DESeq2 DOSE EBSeq IHW biomaRt clusterProfiler edgeR enrichplot genefilter org.Ce.eg.db org.Dm.eg.db org.Hs.eg.db org.Mm.eg.db org.Rn.eg.db |
| Maintainer | Kan Etoh <kaneto@kumamoto-u.ac.jp> |
| License | MIT + file LICENSE |
| Version | 1.0.2 |
| URL | https://github.com/Kan-E/rnaseqviewer/ |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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