Files in Kevin-Haigis-Lab/PackageBluishgreen
Classify cells by fluorescence
.Rbuildignore
.Rprofile
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.gitignore
.pre-commit-config.yaml
DESCRIPTION
LICENSE.md
NAMESPACE
NEWS.md
PackageBluishgreen.Rproj
R/cluster_manually.R
R/link_to_github_issues.R
R/manual_classification.R
R/pancreas.R
R/plot_density.R
R/plot_slide_clusters.R
R/plot_tissue.R
R/summarize_cluster_results.R
R/theme_tissue_slide.R
R/tissue_slide.R
README.Rmd
README.md
_pkgdown.yml
data-raw/example-data.R
data/pancreas.rda
docs/404.html
docs/LICENSE.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Rplot001.png
docs/reference/cluster_manually.html
docs/reference/figures/README-unnamed-chunk-3-1.png
docs/reference/figures/README-unnamed-chunk-4-1.png
docs/reference/figures/README-unnamed-chunk-5-1.png
docs/reference/figures/README-unnamed-chunk-6-1.png
docs/reference/figures/README-unnamed-chunk-9-1.png
docs/reference/get_manual_classification.html
docs/reference/get_slide_metadata.html
docs/reference/index.html
docs/reference/manual_classification.html
docs/reference/pancreas.html
docs/reference/plot_density-1.png
docs/reference/plot_density.html
docs/reference/plot_slide_clusters-1.png
docs/reference/plot_slide_clusters.html
docs/reference/plot_tissue-1.png
docs/reference/plot_tissue.html
docs/reference/set_slide_metadata.html
docs/reference/standard_tissue_plot.html
docs/reference/summarize_cluster_results.html
docs/reference/tissue_slide.html
inst/WORDLIST
inst/extdata/unmicst-OP1165_liver_TUNEL_01.csv
inst/extdata/unmicst-OP1181_pancreas_TUNEL_01.csv
inst/extdata/unmicst-OP1513_lung_TUNEL.csv
inst/extdata/unmicst-OP1704_colon_TUNEL_02.csv
inst/extdata/unmicst-OP1704_skeletal-muscle_TUNEL.csv
man/cluster_manually.Rd
man/figures/README-unnamed-chunk-3-1.png
man/figures/README-unnamed-chunk-4-1.png
man/figures/README-unnamed-chunk-5-1.png
man/figures/README-unnamed-chunk-6-1.png
man/figures/README-unnamed-chunk-9-1.png
man/get_manual_classification.Rd
man/get_manual_classification_cutoff.Rd
man/get_manual_classification_transform.Rd
man/get_slide_metadata.Rd
man/manual_classification.Rd
man/pancreas.Rd
man/plot_density.Rd
man/plot_slide_clusters.Rd
man/plot_tissue.Rd
man/set_slide_metadata.Rd
man/summarize_cluster_results.Rd
man/theme_tissue_slide.Rd
man/tissue_slide.Rd
renv.lock
renv/.gitignore
renv/activate.R
renv/settings.dcf
tests/spelling.R
tests/testthat.R
tests/testthat/test-cluster_manually.R
tests/testthat/test-manual_classification.R
tests/testthat/test-plot_slide_clusters.R
tests/testthat/test-plot_tissue.R
tests/testthat/test-tissue_slide.R
vignettes/.gitignore
vignettes/manual-classification.Rmd
