plot_slide_clusters: Plot the clusters on the slide
In Kevin-Haigis-Lab/PackageBluishgreen: Classify cells by fluorescence

Description Usage Arguments Value Examples

Plot the clusters on the slide

plot_slide_clusters(
  ts,
  method = "manual",
  prop = 0.25,
  point_size = 0.5,
  alpha_values = c(0.2, 0.7)
)

`ts`	A tissue slide object
`method`	The classification method to use. The classification should have already been done.
`prop`	The proportion of cells to include in the plot (too many cells can impact performance).
`point_size`	Size of each point.
`alpha_values`	A two-value vector where each value indicates the transparency of points coming from the two clusters.

A ggplot2 object.

pancreas_slide <- tissue_slide(pancreas)
pancreas_slide <- cluster_manually(pancreas_slide,
  fitc,
  cutoff = 4,
  transform = log10
)
plot_slide_clusters(pancreas_slide)