cluster_manually | Cluster the cells using a manual cutoff |
get_manual_classification | Get the manual classification from a tissue slide |
get_manual_classification_cutoff | Get the cutoff of a manual classification object. |
get_manual_classification_transform | Get the transform function of a manual classification object. |
get_slide_metadata | Get metadata from a tissue slide. |
manual_classification | Manual classification object. |
pancreas | An example dataset from TUNEL on a pancreas. |
plot_density | Plot the distribution of FITC intensities |
plot_slide_clusters | Plot the clusters on the slide |
plot_tissue | Plot the tissue slide showing the FITC intensity |
set_slide_metadata | Set metadata from a tissue slide. |
summarize_cluster_results | Summarize the cluster results |
theme_tissue_slide | A ggplot2 theme for tissue slide plots |
tissue_slide | Tissue slide information |
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