Man pages for Kevin-Haigis-Lab/PackageBluishgreen
Classify cells by fluorescence
| cluster_manually | Cluster the cells using a manual cutoff |
| get_manual_classification | Get the manual classification from a tissue slide |
| get_manual_classification_cutoff | Get the cutoff of a manual classification object. |
| get_manual_classification_transform | Get the transform function of a manual classification object. |
| get_slide_metadata | Get metadata from a tissue slide. |
| manual_classification | Manual classification object. |
| pancreas | An example dataset from TUNEL on a pancreas. |
| plot_density | Plot the distribution of FITC intensities |
| plot_slide_clusters | Plot the clusters on the slide |
| plot_tissue | Plot the tissue slide showing the FITC intensity |
| set_slide_metadata | Set metadata from a tissue slide. |
| summarize_cluster_results | Summarize the cluster results |
| theme_tissue_slide | A ggplot2 theme for tissue slide plots |
| tissue_slide | Tissue slide information |
