Files in KevinSee/QRFcapacity
Carrying Capacity with QRF

.gitattributes
.gitignore
DESCRIPTION
NAMESPACE
QRFcapacity.Rproj
R/calc_watershed_cap.R R/estimate_MIC.R R/get_flowlines.R R/impute_missing_data.R R/plot_partial_dependence.R R/plot_partial_dependence_v2.R R/snapPointsToLines_v2.R README.md analysis/combine_fish_habitat_data.R analysis/est_juv_summer_abund.R analysis/est_juv_winter_abund.R analysis/extrap_covar_viz.R analysis/extrap_qrf_200rch.R analysis/extrap_qrf_mastPts.R analysis/fit_qrf_models.R analysis/mine_stats.R analysis/old_fit_qrf_juv_summer.R analysis/old_fit_qrf_juv_summer_dash.R analysis/old_fit_qrf_juv_winter.R analysis/old_fit_qrf_redds.R analysis/prep_habitat_data.R analysis/prep_juv_summer_fish.R analysis/prep_juv_winter_fish.R analysis/prep_redd_data.R analysis/prep_spawn_recruit_data.R analysis/prep_spp_domains.R analysis/prep_temp_data.R analysis/sensitivity_analysis.R analysis/test_extrap_models.R
data/champ_cu.rda
data/champ_dash.rda
data/champ_dash_avg.rda
data/champ_site_2011_14.rda
data/champ_site_2011_14_avg.rda
data/champ_site_2011_17.rda
data/champ_site_2011_17_avg.rda
data/champ_site_rch.rda
data/champ_temps.rda
data/chnk_domain.rda
data/fh_redds_champ_2014.rda
data/fh_redds_champ_2017.rda
data/fh_sum_champ_2014.rda
data/fh_sum_champ_2017.rda
data/fh_sum_dash_2014_17.rda
data/fh_win_champ_2017.rda
data/fish_sum_data.rda
data/fish_sum_est.rda
data/fish_win_data.rda
data/fish_win_est.rda
data/gaa.rda
data/hab_dict_2014.rda
data/hab_dict_2017.rda
data/int_crb_temp.rda
data/prepped/CHaMP_2011_2014_Data.xlsx
data/prepped/CHaMP_NorW.CPG
data/prepped/CHaMP_NorW.dbf
data/prepped/CHaMP_NorW.prj
data/prepped/CHaMP_NorW.shp
data/prepped/CHaMP_NorW.shp.xml
data/prepped/CHaMP_NorW.shx
data/prepped/MetricSources.xlsx
data/prepped/VisitID_Norwest.csv
data/prepped/chnk_domain.dbf
data/prepped/chnk_domain.prj
data/prepped/chnk_domain.shp
data/prepped/chnk_domain.shx
data/prepped/chnk_domain_GPKG.gpkg
data/prepped/fish_data_summer_prepped.csv
data/prepped/fish_data_winter_prepped.csv
data/prepped/hab_dict_champ_dash.csv
data/prepped/mast_samp_norw.csv
data/prepped/spawner_recruit_data.csv
data/prepped/sthd_domain.dbf
data/prepped/sthd_domain.prj
data/prepped/sthd_domain.shp
data/prepped/sthd_domain.shx
data/prepped/sthd_domain_GPKG.gpkg
data/rch_200.rda
data/redds_site_max.rda
data/redds_site_yr.rda
data/spawn_rec_params.rda
data/spawn_recr_data.rda
data/sthd_domain.rda
git_LFS.txt
man/calc_watershed_cap.Rd man/estimate_MIC.Rd man/get_flowlines.Rd man/impute_missing_data.Rd man/plot_partial_dependence.Rd man/plot_partial_dependence_v2.Rd man/snapPointsToLines_v2.Rd
outgoing/Entiat_QRF_capacity_table.csv
outgoing/Lemhi_obs_fish_densities.csv
outgoing/Methow_QRF_capacity_table.csv
outgoing/Wenatchee_QRF_HUC10_capacity_table.csv
outgoing/Wenatchee_QRF_capacity_table.csv
outgoing/shapefiles/QRF_Capacity_Entiat.dbf
outgoing/shapefiles/QRF_Capacity_Entiat.gpkg
outgoing/shapefiles/QRF_Capacity_Entiat.prj
outgoing/shapefiles/QRF_Capacity_Entiat.shp
outgoing/shapefiles/QRF_Capacity_Entiat.shx
outgoing/shapefiles/QRF_Capacity_Methow.gpkg
outgoing/shapefiles/QRF_Capacity_Salmon.dbf
outgoing/shapefiles/QRF_Capacity_Salmon.gpkg
outgoing/shapefiles/QRF_Capacity_Salmon.prj
outgoing/shapefiles/QRF_Capacity_Salmon.shp
outgoing/shapefiles/QRF_Capacity_Salmon.shx
outgoing/shapefiles/QRF_Capacity_Salmon.zip
outgoing/shapefiles/QRF_Capacity_Wenatchee.gpkg
outgoing/shapefiles/QRF_Redd_Capacity_Salmon.dbf
outgoing/shapefiles/QRF_Redd_Capacity_Salmon.gpkg
outgoing/shapefiles/QRF_Redd_Capacity_Salmon.prj
outgoing/shapefiles/QRF_Redd_Capacity_Salmon.shp
outgoing/shapefiles/QRF_Redd_Capacity_Salmon.shx
outgoing/shapefiles/QRF_Redd_Capacity_Salmon.zip
outgoing/shapefiles/QRF_capacity_metadata.xlsx
output/figures/Chiwawa_SR_p1.pdf output/figures/Chiwawa_SR_p2.pdf output/figures/Chiwawa_SR_p3.pdf output/figures/Chiwawa_SR_p4.pdf output/figures/GAA_200rch_comparison.pdf output/figures/GAA_200rch_comparison_huc6.pdf output/figures/MINE_All.pdf output/figures/MINE_Catg_All.pdf output/figures/MINE_Chnk.pdf
output/figures/QRF_flowchart/QRF_flowchart1.ai
output/figures/QRF_flowchart/QRF_flowchart2.ai
output/figures/QRF_flowchart/QRF_flowchart3.ai
output/figures/QRF_flowchart/QRF_flowchart4.ai
output/figures/capacity_maps.pdf output/figures/capacity_maps_all.pdf output/figures/corr_plot_all_CHaMP.pdf output/figures/corr_plot_all_ChnlUnit.pdf output/figures/corr_plot_all_DASH.pdf output/figures/corr_plot_catg_CHaMP.pdf output/figures/corr_plot_catg_ChnlUnit.pdf output/figures/corr_plot_catg_DASH.pdf output/figures/spawn_rec_comp.pdf output/figures/spawn_rec_curves.pdf
output/modelFits/extrap_200rch_RFSRC_juv_summer_dash.rda
output/modelFits/extrap_200rch_RF_juv_summer.rda
output/modelFits/extrap_200rch_RF_juv_summer_dash.rda
output/modelFits/extrap_200rch_RF_juv_winter.rda
output/modelFits/extrap_200rch_RF_redds.rda
output/modelFits/extrap_200rch_juv_summer.rda
output/modelFits/extrap_200rch_juv_summer_dash.rda
output/modelFits/extrap_200rch_juv_winter.rda
output/modelFits/extrap_200rch_redds.rda
output/modelFits/extrap_mastPts_RF_juv_summer.rda
output/modelFits/extrap_mastPts_RF_redds.rda
output/modelFits/extrap_mastPts_juv_summer.rda
output/modelFits/extrap_mastPts_juv_summer_dash.rda
output/modelFits/extrap_mastPts_juv_winter.rda
output/modelFits/extrap_mastPts_redds.rda
output/modelFits/qrf_juv_summer.rda
output/modelFits/qrf_juv_summer_dash.rda
output/modelFits/qrf_juv_winter.rda
output/modelFits/qrf_redds.rda
reports/Extrapolation.Rmd
reports/Extrapolation.docx
reports/Extrapolation.html
reports/Extrapolation.pdf reports/Habitat_Metric_Selection.Rmd reports/IRA_Watersheds.Rmd
reports/IRA_Watersheds.html
reports/ISEMP QRF Report 20181113.pdf
reports/QRF Development and Applications 20220420.docx
reports/Summer_Juveniles.Rmd
reports/Summer_Juveniles.html
reports/Validation_SpawnRec.Rmd
reports/Validation_SpawnRec.html
reports/figures/Chinook.Parr.png
reports/figures/Chinook.Presmolts.png
reports/figures/Chinook.Redds.png
reports/figures/Lemhi_Capacity_Deficits.zip
reports/figures/Steelhead.Parr.png
reports/figures/Steelhead.Presmolts.png
reports/figures/Steelhead.Redds.png
reports/packages.bib
reports/references.bib
reports/templates/Biomark_ABS_Logo.png
reports/templates/ReportTemplate.docx
reports/templates/american-fisheries-society.csl
reports/templates/author-info-blocks.lua
reports/templates/author-info-blocks2.lua
reports/templates/header_ABS.tex
reports/templates/pagebreak.lua
reports/templates/scholarly-metadata.lua
requests/MRA_watersheds.R requests/QRF_extrapolations_all.R requests/Salmon_Redds.R requests/UGR_MineTailReach.R requests/UpperColumbia_RTT.R requests/extrap_figures.R requests/south_fork_salmon.R
vignettes/.gitignore
KevinSee/QRFcapacity documentation built on Feb. 27, 2023, 3:57 p.m.