API for KonradZych/phenotypes2genotypes
High-Throughput Generation of Genetic Markers and Maps from Molecular Phenotypes for Crosses Between Inbred Strains

Global functions
add.to.population Man page Source code
add.to.populationSub.internal Man page Source code
add.to.populationSubAnnots.internal Man page Source code
add.to.populationSubGeno.internal Man page Source code
add.to.populationSubMap.internal Man page Source code
add.to.populationSubPheno.internal Man page Source code
analyseLineVariance Man page Source code
applyFunctionToFile Man page Source code
ascendingMaptoJigSawMap Man page Source code
assignChrToMarkers Man page Source code
assignLinkageGroups Man page Source code
assignMaximum Man page Source code
assignMaximumNoConflicts Man page Source code
avg_map_distances Man page Source code
bestCorelated.internal Man page Source code
bestCorelatedSub.internal Man page Source code
bestQTL.internal Man page Source code
bestQTLSub.internal Man page Source code
check.population Man page Source code
checkAndBind Man page Source code
checkForEpistasis Man page Source code
chromosomesLengths.internal Man page Source code
cleanGeno.internal Man page Source code
cleanNames.internal Man page Source code
cleanRfs Man page Source code
coloringMode Man page
convertMap.internal Man page Source code
convertType.internal Man page Source code
create.population Man page Source code
createMix Man page Source code
createMix.test Man page Source code
cross.denovo Man page Source code
cross.denovo.internal Man page Source code
cross.saturate Man page Source code
dataObject Man page
dataType Man page
defaultCheck.internal Man page Source code
doCleanUp.internal Man page Source code
donothing Man page Source code
fake.population Man page Source code
fakeFounders.internal Man page Source code
fakeMixUps.internal Man page Source code
fakePheno.internal Man page Source code
fakePhysicalMap.internal Man page Source code
filterRow.internal Man page Source code
find.diff.expressed Man page Source code
find.mixups Man page Source code
findUsingTTest.internal Man page Source code
fullScanRow.internal Man page Source code
generate.biomarkers Man page Source code
generate.biomarkers.internal Man page Source code
genotypeCheck.internal Man page Source code
genotypesToCross.internal Man page Source code
getChrOffsets.internal Man page Source code
getChromosome.internal Man page Source code
getMarkerOffsets Man page Source code
getMarkerOffsets.internal Man page
getMarkerOffsetsFromMap Man page Source code
getPopulationOffsets.internal Man page Source code
getYLocs.internal Man page Source code
getpeaks.internal Man page Source code
groupLabels Man page
inListCheck.internal Man page
inRangeCheck.internal Man page
insertMarkers.internal Man page Source code
invertChromosome.internal Man page Source code
is.integer0 Man page Source code
logarithmic Man page
lowerTrng.internal Man page Source code
majorityCorrelation Man page Source code
majorityOfMarkers Man page Source code
makeChromPal.internal Man page Source code
makeHaplos.internal Man page Source code
map2mapCorrelationMatrix Man page Source code
map2mapImage Man page Source code
mapMarkers.internal Man page Source code
map_distances Man page Source code
margin Man page
markerPlacementPlot Man page Source code
markers Man page
markersCorPlot Man page Source code
matchMarkers Man page Source code
meanCorrelation Man page Source code
mergeChromosomes.internal Man page Source code
mergeEnv.internal Man page Source code
mergeInverted Man page Source code
mlog Man page Source code
mlogit Man page Source code
mprobit Man page Source code
msqrt Man page Source code
normalModeReading Man page Source code
numericCheck.internal Man page Source code
overlapInd Man page
pheno2geno Man page
phenotypeRow Man page
plot4Nmixture Man page Source code
plotChildrenExpression Man page Source code
plotMapComparison Man page Source code
plotMarkerDistribution Man page Source code
plotParentalExpression Man page Source code
plotRPpval Man page Source code
population Man page
power.plot Source code
power.plot Man page
print.population Man page Source code
printGeno.internal Man page Source code
processInteractions Man page Source code
projectOldMarkers Man page Source code
proportion Man page
pull.biomarkers Man page Source code
qtl.comparison.plot Man page Source code
read.population Man page Source code
readSingleFile Man page Source code
rearrangeMarkers Man page Source code
reciproce Man page Source code
reduceChromosomesNumber Man page Source code
removeChromosomes Man page Source code
removeChromosomesSub.internal Man page Source code
removeTooSmallChromosomes Man page Source code
reorganizeMarkersWithin Man page Source code
save.gff Man page Source code
scan.qtls Man page Source code
scoreMixups.internal Man page Source code
selectByLine Man page Source code
selectByLineApply Man page Source code
selectChr Man page Source code
selectPhenotypes Man page Source code
selectTopMarker.internal Man page Source code
set.geno.from.cross Man page Source code
showRPpval Man page Source code
simBC.internal Man page Source code
simulateParentalPhenotypes Man page Source code
splitPheno.Apply Man page Source code
splitPheno.internal Man page Source code
splitPhenoRowEM.internal Man page Source code
sumMajorityCorrelation Man page Source code
switchChromosomes.internal Man page Source code
tTestByLine Man page Source code
tTestByLineApply Man page Source code
testCross Man page
testPopulation Man page
transformation Man page Source code
twoGenosModel Man page Source code
write.population Man page Source code
writeGenotypes.internal Man page Source code
writePhenotypes.internal Man page Source code
writeSingleFile Man page Source code
KonradZych/phenotypes2genotypes documentation built on Feb. 12, 2018, 1:35 a.m.