Files in KonradZych/phenotypes2genotypes
High-Throughput Generation of Genetic Markers and Maps from Molecular Phenotypes for Crosses Between Inbred Strains
.gitignore
DESCRIPTION
NAMESPACE
R/add.to.population.R
R/assignLinkageGroups.R
R/checks.R
R/create.mixtures.R
R/create.population.r
R/cross.denovo.R
R/cross.saturate.R
R/fake.population.R
R/find.mixups.R
R/findDiffExpressed.R
R/generate.biomarkers.R
R/genotypesToCross.R
R/map.functions.R
R/markerPlacementPlot.R
R/markersCorPlot.R
R/plotMapComparison.R
R/plotRoutines.R
R/postprocessing.R
R/power.plot.R
R/qtl.comparison.plot.R
R/read.population.R
R/save.gff.R
R/scan.qtls.r
R/transformations.R
R/utilities.R
R/write.population.R
README.md
data/testCross.rda
data/testPopulation.rda
inst/BUGS.txt
inst/CITATION
inst/TODO.txt
man/RPpval.rd
man/add.to.population.rd
man/assignedChrToMarkers.rd
man/changeChromNumber.rd
man/create.population.rd
man/cross.denovo.rd
man/cross.saturate.rd
man/fake.population.rd
man/find.mixups.rd
man/findDiffExpressed.rd
man/generate.biomarkers.rd
man/map.functions.rd
man/markerPlacementPlot.rd
man/markersCorPlot.rd
man/phenotypes2genotypes-internal.rd
man/phenotypes2genotypes-package.rd
man/plotChildrenExpression.rd
man/plotMapComparison.rd
man/plotMarkerDistribution.rd
man/plotParentalExpression.rd
man/power.plot.rd
man/projectOldMarkers.rd
man/pull.biomarkers.rd
man/qtl.comparison.plot.rd
man/read.population.rd
man/reorganizeMarkersWithin.rd
man/save.gff.rd
man/scan.qtls.rd
man/set.geno.from.cross.rd
man/testCross.rd
man/testPopulation.rd
man/transformations.rd
man/write.population.rd
tests/1k/maps_genetic.txt
tests/1k/offspring_annotations.txt
tests/1k/offspring_genotypes.txt
tests/1k/offspring_phenotypes.txt
tests/1k/test.r
tests/genotypes.csv
tests/map.csv
tests/offspring_phenotypes.csv
tests/parental_phenotypes.csv
tests/test_analysis.R
