Description Usage Arguments Details Value Author(s) See Also Examples
Reorder markers within cross object using supplied marker ordering vector.
1 | reorganizeMarkersWithin(cross, ordering)
|
cross |
An object of class |
ordering |
Ordering vector specifying for every marker in the cross object (by name) which new chromosome this marker will be moved to. |
Functions reorders an object of class cross
using the supplied marker ordering vector. This vector contains for each
marker the chromosome number that this marker will be moved to.
An object of class cross
. See read.cross
for details.
Konrad Zych k.zych@rug.nl, Danny Arends Danny.Arends@gmail.com Maintainer: Konrad Zych k.zych@rug.nl
cross.denovo
- Creating a de novo genetic map or a chromosome assignment vector.
cross.saturate
- Saturate an existing genetic map by using phenotype markers.
assignChrToMarkers
- Create ordering vector from chromosome assignment vector.
1 2 3 4 5 6 7 | data(testCross)
data(testPopulation)
assignment <- cross.denovo(testPopulation,n.chr=5,verbose=TRUE,map="genetic",
comparisonMethod=sumMajorityCorrelation, use.orderMarkers=FALSE,reOrder=FALSE)
assignment #boring,but expected
ordering <- assignChrToMarkers(assignment,testCross)
testCross <- reorganizeMarkersWithin(testCross, ordering)
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