qtl.comparison.plot: Comparison of qtl profiles.

In KonradZych/phenotypes2genotypes: High-Throughput Generation of Genetic Markers and Maps from Molecular Phenotypes for Crosses Between Inbred Strains

Description

Plots comparison between the qtl profiles of two cross objects.

Usage

	qtl.comparison.plot(cross1, cross2, chr, ...)

Arguments

cross1	An object of class cross. See read.cross for details.
cross2	An object of class cross. See read.cross for details.
chr	Specifies the chromosome to be shown (only one chromosome can be plotted at a time.
...	Arguments passed to scanone function (see scanone).

Details

Plots markers from moth old and new map as points and in the background - comparison between them done using selected comparison method.

Value

Matrix of comparisons between chromosomes obtained using comparison method.

Author(s)

Konrad Zych [e-mail], Danny Arends [e-mail] Maintainer: Konrad Zych [e-mail]

See Also

• plotMapComparison - Plotting routine for comparison of two genetic maps.

• projectOldMarkers - Plotting routine for showing how markers from original map are placed on saturated map.

• cross.saturate - Saturate existing map.

• cross.denovo - Create de novo genetic map or chromosome assignment vector.

Examples

	data(testCross)
	qtl.comparison.plot(testCross,testCross)

KonradZych/phenotypes2genotypes documentation built on May 30, 2019, 2:45 p.m.