Description Usage Arguments Details Value Author(s) References See Also Examples
Simulates a basic population object for use in examples.
1 2 | fake.population(n.founders = 4, n.offspring = 100, n.markers=100,n.chromosomes=10,
type = c("riself", "f2", "bc", "risib"), n.mixups=0, verbose=FALSE,...)
|
n.founders |
Number of founders to be simulated. |
n.offspring |
Number of offspring individuals to be simulated. |
n.markers |
Number of markers individuals to be simulated. |
n.chromosomes |
Number of chromosomes individuals to be simulated. |
type |
Type of the cross to be faked:
|
n.mixups |
Number of mixups to be faked. |
verbose |
Be verbose. |
... |
To be passed to |
This function simulates a population object that can be used for further analysis.
An object of class population
. See create.population
for details.
Konrad Zych k.zych@rug.nl, Danny Arends Danny.Arends@gmail.com Maintainer: Konrad Zych k.zych@rug.nl
Copenhaver, G. P., Housworth, E. A. and Stahl, F. W. (2002) Crossover interference in arabidopsis. Genetics 160, 1631–1639.
Foss, E., Lande, R., Stahl, F. W. and Steinberg, C. M. (1993) Chiasma interference as a function of genetic distance. Genetics 133, 681–691.
Zhao, H., Speed, T. P. and McPeek, M. S. (1995) Statistical analysis of crossover interference using the chi-square model. Genetics 139, 1045–1056.
Broman, K. W. (2005) The genomes of recombinant inbred lines Genetics 169, 1133–1146.
Teuscher, F. and Broman, K. W. (2007) Haplotype probabilities for multiple-strain recombinant inbred lines. Genetics 175, 1267–1274.
read.population
- Load genotype, phenotype, genetic map data files into R environment into a population object.
add.to.population
- Add data to existing population object.
sim.cross
- Function from R/qtl package used to simulate genotypic data.
create.population
- Create object of class population from data already in R environment.
1 |
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