LEEF_2_plot_tocs_per_bottle_per_timestamp: Plot diagnostic plot to check number of species per timestamp

In LEEF-UZH/LEEF.analysis: Access Functions, Tests and Basic Analysis of the RRD Data from the LEEF Project

Plot diagnostic plot to check number of species per timestamp

Description

Plot diagnostic plot to check number of species per timestamp

Usage

LEEF_2_plot_tocs_per_bottle_per_timestamp(
  db = getOption("RRDdb", "LEEF.RRD.sqlite"),
  type = c("IC", "TC", "TN", "TOC"),
  treatment_begin_day = 70,
  treatment_end_day = 154,
  arrow = FALSE
)

Arguments

db	fully qualified path to the sqlite database. Default, read from option RRDdb. If not set, defaults to option RRDdb; if this is not set, defaults to LEEF.RRD.sqlite
type	the type of the measurement which should be displayed. A vector with the types. Possible values are: "TOC", "TN", "IC", "TN", "".
treatment_begin_day	begin of treatment (vertical red line in plot). If NULL none is plotted.
treatment_end_day	end of treatment (vertical red line in plot). If NULL none is plotted.
arrow	if TRUE read data from arrow instead of sqlite database

Value

ggplot object of the plot

LEEF-UZH/LEEF.analysis documentation built on Feb. 8, 2025, 11:18 a.m.